Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKRLKKTLHLSSLSLASLALSSAALAAAPVMLDQGKEWTESHRQDFYSRDQGSQVMPLPWLKALRQPDGTPFLADSLARYGYLPNPKAPAEGLPVGFTVAGTGARQMVGMTCSACHTRQIEVKGTAYRIDGGPAIVDFQAFLADLDRAVGPLTSDDAAFDAFAKPILGANPPPGARDALLAAVKEWYEPYHTLIERALPKDTWGPARLDAVSMIFNRLTGLDIGTAPPYLIPDNIKAADAPVRYPFLWNAARQNKTQWPGFAANGNDLLGLARNVGEVYG--VFAT-----F-HPQKSKFHLLGMDYLKIN---SAN-FHGLGKLEDLIKKIGPPKWPWA--------VDKHLARKGALIFARKTDEGGCVECHGIRIKDLVLWDTPLRDVGSDSRQHAILDGQVQTGVMEGARMPFGQPLKATDGAFDVLAVAVAGSILQHFVPILGEKHDAKAAAVKPESVMTDETRQLLTAFQKPVRTQADPYPYESRVLQGIWAAAPYLHNGSVPTLEELLKPAAERVESFPVGSAYDVDKVGLAAQQTQFGSYVLKTTGCEQRDSGNSRCGHEYGTSLSAEEKRALLEYLKVL |
2VHD Chain:A ((76-299)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPRNSPTVFNAVFNAAQFWDGRAKDLG-----EQAKGPIQNSVEMHSTPQLVEQTLGSIPEYVDAFRKAFPKAGKPVSFDNMALAIEAYEATLVTPDSPFDLYLKGDDKALDAQQKKGLKAFMD----SGCSACHNGINL--GG--QAYFPFGLVKKP--------DASVLPS-----------------------------------------GDKGRF-----------AVTK-----T-QSDEYVFRAAPLRNVALTAPYFHSGQVWELKDAVA--------IMGN-----------------------------AQ---------LGKQLAPDDVENIVAFLHSL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VHD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -27339 for 1546 contacts (-17.7/contact) +
2D Compatibility (PS) -21286 + (NN) -12844 + (LL) 21368
1D Compatibility (HY) -1200 + (ID) 1800
Total energy: -43101.0 ( -27.88 by residue)
QMean score : 0.171
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