Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLSIYQASIPTFLRTLGNLSAILKKAAAHAEAKNIDPRIFIDARLAPDMFPLARQVQIASDAAKGAGARLAGLEVPSYA-DTETTFDELQARIARTVEFLEGI----REEQLDGAEERNVTLKVR-GQEISFNGRDFLFGFALPNFFFHVTTAYAILRHNGVELGKMDFLGGA
3GOR Chain:A ((27-148))
----------------------------------KIDEAH-YDYKPTPTSMTAKQLATHMLFSFYNFANTAKHGDPSLFRQKIEEPETNLAKLAETYTEKTRQLIESMSDDDFD----RTLDLTAIFGT--QMSTAQFLQ-LAMDHEIHHKGQLFVYVRGMGHTDLPLFVKRG-
General information:
TITO was launched using:
RESULT:
Template:
3GOR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46242 for 741 contacts (-62.4/contact) +
2D Compatibility (PS) -12327 + (NN) -4587 + (LL) 3716
1D Compatibility (HY) 800 + (ID) 850
Total energy: -59490.0 ( -80.28 by residue)
QMean score : 0.271
(partial model without unconserved sides chains):
PDB file :
Tito_3GOR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GOR-query.scw
PDB file :
Tito_Scwrl_3GOR.pdb
: