Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDLTLHYLYDPLCGWCYGASPLL-AAACEV----TGLDVRLHGGGMMTDANRQPVGAGLRHYVMPHDLRIAQLTGQPFGKDYFDGLLRDTSAVFDSAPPTAAVLAAEALD-GLGAAMLARIQRAHYVEGRRIAERPVLLELGAE-LGLG-EGFAEAFDACSGEPLRAHFADSRRLMNRLGAAGFPTFALERDGRLQVLDTGRYLGQPDDWRAFLETQLRLAGGSGAVGGAAAPLCRIDGCA
3GHA Chain:A ((29-194))
-APVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFHG---------------------------------------------KGSRLAALASEEVWKEDPDSFWDFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKIKPETLKENLD---KETFASQVEKDSDLNQKMNIQATPTIYVNDK----VIK---NFADYDEIKETIEKELKGK--------------------
General information:
TITO was launched using:
RESULT:
Template:
3GHA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98002 for 1192 contacts (-82.2/contact) +
2D Compatibility (PS) -16906 + (NN) -5353 + (LL) 2952
1D Compatibility (HY) -2800 + (ID) 1000
Total energy: -121109.0 ( -101.60 by residue)
QMean score : 0.349
(partial model without unconserved sides chains):
PDB file :
Tito_3GHA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GHA-query.scw
PDB file :
Tito_Scwrl_3GHA.pdb
: