Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIHSSGGVDMKKTASAVWQGGLKDGKGTLSTESGALKDNPYGFNTRFEGA-P-GTNPEELIGAAHAGCFSMALSMMLGEAGLTAERI-ETRAEVTLDKQSDGFAITAVHLVLRARVPGADAQTFEQIANKAKAGCPVSKVLNAKISLDASLDG
1USP Chain:A ((3-138))
----------NVYTAEATATGGRAG-TTR--SSDDRLN-LDLSVPAEMGGDGGPGTNPEQLFAAGYAACFQGALGVVSRRQKIDVPADSTITARVGLQKA--GLAFA-LDVELEGHFPGLSREQAEGLMHAAHEVCPYSAATRNNVDVRLKVRE
General information:
TITO was launched using:
RESULT:
Template:
1USP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36092 for 854 contacts (-42.3/contact) +
2D Compatibility (PS) -14070 + (NN) -4024 + (LL) 84
1D Compatibility (HY) -6000 + (ID) 1650
Total energy: -61752.0 ( -72.31 by residue)
QMean score : 0.274
(partial model without unconserved sides chains):
PDB file :
Tito_1USP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1USP-query.scw
PDB file :
Tito_Scwrl_1USP.pdb
: