Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------MRPLTRLVPLALLLLAGCAGPLPQPDPQMAWVELRSAPANTLLAERLDGERLSDGRYFQVTPGRHVLE-----VRFQYELYGGSGGGG--GGFGEPVQINC--YQQVVYDGFEAGRRYRLEVRPQLRRALALLSDERGEVVARSNFQTSRCPPY
1VCP Chain:A ((1-149))
CIFEVKHEGKVTGYACLVGDKVMKPAHVKGVID--NADLAKLAFKKSSKYDLECAQIPVHMRSDASKYTHEKPEGHYNWHHGAVQYSGGRFTIPTGAGKPGDSGRPIFDNKGRVVAIVLGGANEGS----------RTALSVVTWNK-DMVTRVTPEGS--EEW
General information:
TITO was launched using:
RESULT:
Template:
1VCP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60685 for 959 contacts (-63.3/contact) +
2D Compatibility (PS) -13654 + (NN) -5614 + (LL) 984
1D Compatibility (HY) -5200 + (ID) 1200
Total energy: -85369.0 ( -89.02 by residue)
QMean score : 0.135
(partial model without unconserved sides chains):
PDB file :
Tito_1VCP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VCP-query.scw
PDB file :
Tito_Scwrl_1VCP.pdb
: