Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLDVP-------------VLLAAVSPDSPCGDDLEYDAAFLELERIAQGQPERQ---------------MGDAV-----LPAEPPEWPRVRALASELFGRSKDLRVANLLLQSNVALDGLDGLADGLLLVRELLGQYWDGVYPLLDADDDNDPTFR-INALTGLVAEPLL-QLVWAIPLVRSR----AFGPVNLRAALNAAGLQR----FASETLS--PEQIAGAFADADADALAAT-----RRA--LDGAQEHALAIESGVAERVGSAQGLDLGPLRQLLRQALQVFDLYGPQGAGESLAPGAEAVAD-----------EQVGAAPVAAVAAPA-PRASGEIANREDVLRQLDRLL---EYYVRHEPSSPVPVLLKRAKTL-------VTADFAEIVRNLIPDG---ISQFETLRGPESE-------- |
| 4Q6O Chain:A ((21-437)) | MIEKAPTNVEDRDKAPHLLLLAGIQGDEPGG--FNATNLFLMHYSVLKGLVEVVPVLNKPSMLRNHRGLYGDMNRKFAALDKNDPEYPTIQEIKSLIAKPSID---AVLHLHDG------GGYYRPVYVDAMLNPKRWGNCF-IIDQDEVKGAKFPNLLAFANNTIESINAHLLHPIEEYHLKNTRTAQGDTEMQKALTFYAINQKKSAFANEASKELPLASRVFYHLQAIEGLLNQLNIPFKRDFDLNPNSVHALINDKNLWAKISSLPKMPLFNLRPKLNHFPLPHNTKIPQIPIESNAYIVGLVKNKQEVFLKYGNKLMTRLSPFYIEFDPSLEEVKMQIDNKDQMVKIGSVVEVKESFYIHAMDNIRANVIGFSVSNENKPNEAGYTIKFKDFQKRFSLDKQERIYRIEFYKNNAFSGMILVKFV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q6O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -23923 for 2373 contacts (-10.1/contact) +
2D Compatibility (PS) -34630 + (NN) -5619 + (LL) 616
1D Compatibility (HY) -12800 + (ID) 3450
Total energy: -79806.0 ( -33.63 by residue)
QMean score : 0.168
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