Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAELTLQERLQPSLLDRLTDDEPGNLKEAAERRVLTLNQLKASVLRDLAWLFNTTSLFDHGPAARMPAGNSVLNYGLPALAGHTASSVDVHAIEALLTETIATFEPRIIRSSLRVRAQLLPGEMDHNALSFEIEGDLWAEPAPLRLLLTTNLDLETGHVRVAQGERRRT
2W0C Chain:T ((1-127))
-----MANFLTKNFVWILAAGVGVWFYQKADNAAKTATKPIADFLAELQFLVNGSNY--------------------------------VKFPNAGFVLTRDALQDDFIAYDDRIKAWLGTHDRHKDFLAEILDHERRVKPVYRKLIGNI---IDASTIRAASGVEL--
General information:
TITO was launched using:
RESULT:
Template:
2W0C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13150 for 546 contacts (-24.1/contact) +
2D Compatibility (PS) -13188 + (NN) 1507 + (LL) 1800
1D Compatibility (HY) -4000 + (ID) 1100
Total energy: -28131.0 ( -51.52 by residue)
QMean score : 0.087
(partial model without unconserved sides chains):
PDB file :
Tito_2W0C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2W0C-query.scw
PDB file :
Tito_Scwrl_2W0C.pdb
: