Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLINTQVQPFKVNAFHNGKFIEVTEESLKGKWSVLIFMPAAFTFNCPTEIEDAANNYGEFQKAGAEVYIVTTDTHFSHKVWHETSPAVGKAQFPLIGDPTHQLTNAFGVHIPEEGLALRGTFVINPEGVIKTVEIHSNEIARDVGETVRKLKAAQYTAAHPGEVCPAKWKEGEKTLAPSLDLVGKI
1YEP Chain:B ((1-165))
-SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVC---------------------
General information:
TITO was launched using:
RESULT:
Template:
1YEP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95740 for 1264 contacts (-75.7/contact) +
2D Compatibility (PS) -18323 + (NN) -7663 + (LL) 1364
1D Compatibility (HY) -14800 + (ID) 4550
Total energy: -139712.0 ( -110.53 by residue)
QMean score : 0.657
(partial model without unconserved sides chains):
PDB file :
Tito_1YEP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YEP-query.scw
PDB file :
Tito_Scwrl_1YEP.pdb
: