Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSRAARPCNRFCSLLLGLALLMPASLPLSAAETVAPPSPRTLIIDTDPGADDVIALLFAMASPKELKIQALTTVAGNVPLEKTARNARLAREWGKRPDIPVYAGAPRPLLRTPIYAADVHGSEGISGVEVHEPKQPLAEG-NAVDYLIRTLRAAPEKSVTLAMLGPETNLALALTQAPDIVKGVREIVIMGGAHFNGGNITPAAEFNIFADPHAAEIVLKSGAPITMLPLDVTHKILTSPERIAKLRNLGNQAGKTVADILDAYVQYDIKYYGLKGGPVHDATVVAYLLKPSLFKGKRINVQVDSREGITFGQTVADWYGGLKQPANVEWINEGDAQGFFDLLTERIARLP |
| 1Q8F Chain:B ((4-306)) | ---------------------------------------RKIILDCDPGHDDAIAIMMAAKHPA-IDLLGITIVAGNQTLDKTLING-LNVCQKLEINVPVYAGMPQPIMRQQIVADNIHGDTGLDG-PVFEPLTRQAESTHAVKYIIDTLMAS-DGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGA-YGTGNFTPSAEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLAGGPVHDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGVLGKPANTKVGITIDTDWFWGLVEECVRGYI |
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General information:
TITO was launched using:
| RESULT:
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Template: 1Q8F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -136937 for 2884 contacts (-47.5/contact) +
2D Compatibility (PS) -32782 + (NN) -22128 + (LL) 2792
1D Compatibility (HY) -27200 + (ID) 6400
Total energy: -222655.0 ( -77.20 by residue)
QMean score : 0.585
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