Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPRLSALLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSG-EAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAVPYLWGAVGLAINTPQAEAAY-GGP-LPNSWSLLFDASQSQRLKSCGI-----SLLDAPDETLAILLNYQGRNLGRTAPSQVRRAAEALHGLRPNLRYVDSER-YIADLEGGRLCLAMAWVGDALRAAK------AGQPVSFEVPQEGSVLFIDNLVIPAGAQHPREAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH |
| 3TTM Chain:A ((6-346)) | ------------------DNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKA-AFGDNAPVDSWDLVFKPE----NIQ-KLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFH-SSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSG-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TTM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -172708 for 2777 contacts (-62.2/contact) +
2D Compatibility (PS) -35375 + (NN) -20028 + (LL) 2540
1D Compatibility (HY) -26800 + (ID) 5600
Total energy: -257971.0 ( -92.90 by residue)
QMean score : 0.584
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