Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTTVIPPSLLDVDFPAGSVALVGAGPGDPGLLTLRAWALLQQAEVVVYDRLVARELIALLPESCQRIYVGKRCGHHSLPQEEINELLVRLARQQRRVVRLKGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCSTYAGIPLTHRDLAQSCTFVTGHLQNDGRLD-LDWAGLARGKQTLVFYMGLGNLAEIAARLVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIVVGQVVALFAERAMAHPSYLGAGSPVSREAVACA
1S4D Chain:I ((15-253))
-----------------GSVWLVGAGPGDPGLLTLHAANALRQADVIVHDALVNEDCLKLARPGAVLEFAGKRGG-PSPKQRDISLRLVELARAGNRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGIGGLAYAGIPVTHREVNHAVTFLTGHDSS--VPDRINWQGIASGSPVIVMYMAMKHIGAITANLIAGGRSPDEPVAFVCNAATPQQAVLETTLARAEADVAAAGLEPPAIVVVGEVVRLRAALDWIGALDGRKLAAD--------
General information:
TITO was launched using:
RESULT:
Template:
1S4D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -190809 for 1977 contacts (-96.5/contact) +
2D Compatibility (PS) -26157 + (NN) -15380 + (LL) 1220
1D Compatibility (HY) -18400 + (ID) 5400
Total energy: -254926.0 ( -128.95 by residue)
QMean score : 0.580
(partial model without unconserved sides chains):
PDB file :
Tito_1S4D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S4D-query.scw
PDB file :
Tito_Scwrl_1S4D.pdb
: