Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIPQTLTNTNLFIDGVSFAGDVPSLTLPKLAVKTEQYRAGGMDAPVSIDMGLEAMEAKFSTNGARREALNFFGLADQSAFNGVFRGSFKGQKGASVPVVATLRGLLKEVDPGDWKAGEKAEFKYAVAVSYYKLEVDGREVYEIDPVNGVRAINGVDQLAGMRNDLGL-
2KCK Chain:A ((1-112))
MVDQN----------------------PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-------PEESKYWLMKGKALYNL-----------ERYEEAVDCYNYVINVIEDEYN---KDVWAAKADALRY---IEGKE----------VEAEIAEARAKLEHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
2KCK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9408 for 736 contacts (-12.8/contact) +
2D Compatibility (PS) -11946 + (NN) -5073 + (LL) 2340
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -26837.0 ( -36.46 by residue)
QMean score : 0.359
(partial model without unconserved sides chains):
PDB file :
Tito_2KCK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KCK-query.scw
PDB file :
Tito_Scwrl_2KCK.pdb
: