Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDCLFCKIVAGEVPARKFYEDEEVVAFHDIGPQAPVHFLVIPKRHIPTLEHLTEADRPLAGHILFTAQRLAREQGCEEGFRVVMNCNDLGGQTVHHIHMHVLGQRQMHWPPG
4NJZ Chain:D ((54-163))
--TIFSRILDKSLPADILYEDQQCLVFRDVAPQAPVHFLVIPKKPIPRISQAEEEDQQLLGHLLLVAKQTAKAEGLGDGYRLVINDGKLGAQSVYHLHIHVLGGRQLQWPPG
General information:
TITO was launched using:
RESULT:
Template:
4NJZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93789 for 765 contacts (-122.6/contact) +
2D Compatibility (PS) -12299 + (NN) -9767 + (LL) 132
1D Compatibility (HY) -12000 + (ID) 2600
Total energy: -130323.0 ( -170.36 by residue)
QMean score : 0.626
(partial model without unconserved sides chains):
PDB file :
Tito_4NJZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NJZ-query.scw
PDB file :
Tito_Scwrl_4NJZ.pdb
: