Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLRNGVPSMTKDEKEKTHVDAIIERYKDLMVEIPPADRQPGLSLLWPVPAQPAIDKGVRQAENWLADQIEGQLWTAFAFGRDSLPTPMQKTAFEVAFLTRLQQRLVAARRSG
4QND Chain:A ((5-101))
-------------MALIERIGKALEPLMLVMGLISPLATMPQLYKLYVSHSEHALGLS---LTTWLLYSFIALLWTIYGIYHKNPTIWVGNCLGFLMYVAMVVGIIAHTGGTY
General information:
TITO was launched using:
RESULT:
Template:
4QND.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 13337 for 632 contacts (21.1/contact) +
2D Compatibility (PS) -10392 + (NN) -4899 + (LL) 968
1D Compatibility (HY) -6400 + (ID) 650
Total energy: -8036.0 ( -12.72 by residue)
QMean score : 0.165
(partial model without unconserved sides chains):
PDB file :
Tito_4QND.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QND-query.scw
PDB file :
Tito_Scwrl_4QND.pdb
: