Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQVSVYRYNPDKDAAPYMQDFQVDTN-GKDVMVLDVLALIKEQDEGFSYRRSCREGVCGSDGMNINGKNGLACITPLSAAGLKGGKLVIRPLPGLPVIRDLVVDMSIFYKQYEKVKPFLQND-TPAPAIERLQTPEEREKLDGLYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFLADSRDTKTEERLASLDDPFSVFRCRGIMNCVNVCPKGLNPTKAIGHVRNMLLQSGT
2WDV Chain:F ((3-235))
-LEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
General information:
TITO was launched using:
RESULT:
Template:
2WDV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129656 for 1810 contacts (-71.6/contact) +
2D Compatibility (PS) -24674 + (NN) -13641 + (LL) 208
1D Compatibility (HY) -30000 + (ID) 8300
Total energy: -206063.0 ( -113.85 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_2WDV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WDV-query.scw
PDB file :
Tito_Scwrl_2WDV.pdb
: