Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKQHAFTREDLLRCSRGELFGPGNAQLPAPNMLMIDRIVHISDVGGKYGKGELVAELDINPDLWFFACHFEGDPVMPGCLGLDAMWQLVGFYLGWQGNPGRGRALGSGEVKFFGQVLPTAKKVTYNIHIKRTINRSLVLAIADGTVSVDGREIYSAEGLRVGLFTSTDSF
4B8U Chain:B ((3-171))
--KQHAFTREDLLRCSRGELFGPGNAQLPAPNMLMIDRIVHISDVGGKYGKGELVAELDINPDLWFFACHFEGDPVMPGCLGLDAMWQLVGFYLGWQGNPGRGRALGSGEVKFFGQVLPTAKKVTYNIHIKRTIN--LVLAIADGTVSVDGREIYSAEGLRVGLFTSTDSF
General information:
TITO was launched using:
RESULT:
Template:
4B8U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130131 for 1315 contacts (-99.0/contact) +
2D Compatibility (PS) -17549 + (NN) -8146 + (LL) 332
1D Compatibility (HY) -25200 + (ID) 8350
Total energy: -189044.0 ( -143.76 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_4B8U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4B8U-query.scw
PDB file :
Tito_Scwrl_4B8U.pdb
: