Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRPVLPLLLSLSLCAPALADWSGPIEQPLWSLPAAPGLSRWLIVHNLSSAAADGLYHVEVLERRQGQQPWQFQRLAAHLALTEQALRASIVAPLKR--GGVYPESYQFAYRQWQERQAAGQAP-------VCRRTVDECLRAPD----
2C1D Chain:B ((1-137))
----------CETAPKEVVYVEGAVEASLTGAPGNPEEGVRIMTTN-ALGNCVACHQIGALPDVEFPGTIAPPLDGAGDRWTEAQLRGIVANAKMTFEGTFMPAFYKVDGFVRPGDGFSGKAGAEPLAPILNAQQIEDVVAFLVTLKE
General information:
TITO was launched using:
RESULT:
Template:
2C1D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39979 for 885 contacts (-45.2/contact) +
2D Compatibility (PS) -12275 + (NN) -922 + (LL) 1072
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -54954.0 ( -62.09 by residue)
QMean score : 0.192
(partial model without unconserved sides chains):
PDB file :
Tito_2C1D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2C1D-query.scw
PDB file :
Tito_Scwrl_2C1D.pdb
: