Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------MGRTVEDVDMLNHHFRVCSATVYRPPGDGCQSATSQPSAWWMAAK---ESRSGQLRRVEHVAFEGHPA----AVLAGRAVE---DRAVVGEADGQAEAD-----VGSV---------LRGVQL--AFEVQLEHARLDAFQADGDVRVVH--GLAFAAALLGADGEGHG---------------------------VSVHVLLQLAWGRRRQRGGQT-TGRRAGWPVLAAVGAARGLGIIRRRRSP-----TAHHQPTPEGMMKLPVLAVLGA--ALLLSA-CAKKEAEACASPDVKDQLMR--IFLQGAITERSPEFKD------SALRDVAILEKDPDSGVLSCVGTLSVPAGQQVVEGVLQYRIAPVA----KSDYDYLLLDTA------GANTTA-LAQRLNKALGQ--- |
| 3J9O Chain:B ((79-505)) | VIDKLIDLQVNSIISNDEFRALEQEWLKVQEVCQEDYDNVEVSILDVKKEELQYDFERNLYDISSSDFFKKVYVSEFDQYGGEPYGAILGLYNFENTTNDIIWLTGMGMVAKNSHAPFIASIDKSFFGVKDLSEITHIKSFEALLEHPRYKEWNDFRNLDVAAYIGLTVGDFMLRQPYNPENNPVQYKLMEGFNEFVDYDKNESYLWGPASIHLVKNMMRSYDKTRWFQYIRGVESGGYVKNLVACVYDNKGILETKSPLNVLFADYMELSLANIGLIPFVSEKGTSNACFFSVNSAKKVEEFVDGFDSANSRLIANLSYTMCISRISHYIKCVIRDKIGSIVDVESIQKILSDWISEFVTTVYQPTPLEMARYPFRNVSIEVKTIPGKPGWYSCKINVIPHIQFEGMNTTMTIDTRLEPELFGTNN |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3J9O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -42977 for 2084 contacts (-20.6/contact) +
2D Compatibility (PS) -32329 + (NN) 10706 + (LL) 0
1D Compatibility (HY) -13200 + (ID) 2950
Total energy: -80750.0 ( -38.75 by residue)
QMean score : 0.107
|
|
|