Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNAIPLEHGLALASVLFALGLVGLMVRRNILFVLMSLEVMMNAAALAFVVAGSRWGQPDGQVMFILVLSLAAAEASIGLAILLQLYRRFHTLDIDAASEMRG
3RKO Chain:G ((1-100))
--MIPLQHGLILAAILFVLGLTGLVIRRNLLFMLIGLEIMINASALAFVVAGSYWGQTDGQVMYILAISLAAAEASIGLALLLQLHRRRQNLNIDSVSEMRG
General information:
TITO was launched using:
RESULT:
Template:
3RKO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71822 for 597 contacts (-120.3/contact) +
2D Compatibility (PS) -11069 + (NN) -12696 + (LL) 128
1D Compatibility (HY) -15600 + (ID) 3550
Total energy: -114609.0 ( -191.97 by residue)
QMean score : 0.313
(partial model without unconserved sides chains):
PDB file :
Tito_3RKO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RKO-query.scw
PDB file :
Tito_Scwrl_3RKO.pdb
: