Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSKNTICLWYDSAALEAATFYAETFPDSAVLAV-HRAPGDYPSGKEGDVL-TVEFRVMGIPC-LGLNG-GPAFRHSEAFSFQVATDDQAETDRLWNAIVDNGGEE--------SACGW-CRDKWGISW-QITPRVLSEAIASPDRAAARRAFEAMMTMGRIDIATIEKAFKG
1U6L Chain:A ((2-138))
-SLQIVPYLIFNGNCREAFSCYHQHL--GGTLEAMLPFGDSPEPADWKDKIMHARLVVGSFALMASDNHPAYPYEGIKGCSISLNVDSKAEAERLFNALAEGGSVQMPLGPTFWAASFGMFTDRFGVAWMVNCEQD-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1U6L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26368 for 679 contacts (-38.8/contact) +
2D Compatibility (PS) -11916 + (NN) -2091 + (LL) 3408
1D Compatibility (HY) 1200 + (ID) 300
Total energy: -36067.0 ( -53.12 by residue)
QMean score : 0.164
(partial model without unconserved sides chains):
PDB file :
Tito_1U6L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U6L-query.scw
PDB file :
Tito_Scwrl_1U6L.pdb
: