Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MKKRFTEEQILDFLKQAEAG--VPVKELCRRHSFSDATFYT---------------------------------------------------------------------------------------
1HLV Chain:A ((1-131))
MGPKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYGVASTCRKTNKLSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRRS
General information:
TITO was launched using:
RESULT:
Template:
1HLV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13458 for 198 contacts (-68.0/contact) +
2D Compatibility (PS) -4402 + (NN) -2054 + (LL) 0
1D Compatibility (HY) -400 + (ID) 350
Total energy: -20664.0 ( -104.36 by residue)
QMean score : 0.789
(partial model without unconserved sides chains):
PDB file :
Tito_1HLV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HLV-query.scw
PDB file :
Tito_Scwrl_1HLV.pdb
: