Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNAKEILVHSLRLLENGDARGWCDLFHPEGVLEFPYAPPGWKTRFEGRETIWAHMRLFPEHLTVRFTDVQFYETADPDLAIGEFHGDGVATVSGGKLAQDYISVLRTRDGQILLYRDFWNPLRHLEALGGVEAAAKIVQGA
4J9A Chain:D ((1-125))
MNAKEIVVHALRLLENGDARGWSDLFHPEGVLEYPYPPPGYKTRFEGRETIWAHMRLFPEYMTIRFTDVQFYETADPDLAIGEFHGDGVLTA-GGKLAYDYIAVWRTRDGQILLYRLFFNPLRVL----------------
General information:
TITO was launched using:
RESULT:
Template:
4J9A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57698 for 872 contacts (-66.2/contact) +
2D Compatibility (PS) -13294 + (NN) -8436 + (LL) 1332
1D Compatibility (HY) -16800 + (ID) 5350
Total energy: -100246.0 ( -114.96 by residue)
QMean score : 0.421
(partial model without unconserved sides chains):
PDB file :
Tito_4J9A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J9A-query.scw
PDB file :
Tito_Scwrl_4J9A.pdb
: