Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATQGVFTLPANTRFGVTAFANSSGTQTVNVLVNNETAATFSGQSTNNAVIGTQVLNSGSSGKVQVQVSVNGRPSDLVSAQVILTNELNFALVGSEDGTDNDYNDAVVVINWPLG
2JDH Chain:C ((2-115))
-ATQGVFTLPANTRFGVTAFANSSGTQTVNVLVNNETAATFSGQSTNNAVIGTQVLNSGSSGKVQVQVSVNGRPSDLVSAQVILTNELNFALVGSEDGTDNDYNDAVVVINWPLG
General information:
TITO was launched using:
RESULT:
Template:
2JDH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44980 for 844 contacts (-53.3/contact) +
2D Compatibility (PS) -13145 + (NN) -11696 + (LL) 208
1D Compatibility (HY) -14000 + (ID) 5700
Total energy: -89313.0 ( -105.82 by residue)
QMean score : 0.749
(partial model without unconserved sides chains):
PDB file :
Tito_2JDH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JDH-query.scw
PDB file :
Tito_Scwrl_2JDH.pdb
: