Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNSSRSVNPRPSFAPRALSLAIALLLGAPAFAANSGEAPKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQW-G-DWSAYFMGQAV--AATDTIETDTLQSDTDDGNNSRNDGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLRED-----SGQWQDTNIEALNWSFET-TLLNAHAGVAQRFSEYRTDLD-ELAP----------EDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLR----EDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQGLLPASMSQYVDEPSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF |
| 2Y0L Chain:A ((18-397)) | ---------------------------------------SKASLETRNFYMNRDFR--------KREEWAQGFILNLQSGYTQGTVGFGLDAMGMLGVKLDS-----------------------PDTYSKLGL-TAKVKV----SQSELKVGTLIPKLPSVQPNNGRIFPQIFEGALLTSKEIKDLGFTAGRLEKTKI----DSEDLALNDKNGRFAGVSADHFDLGG--LDYKLTDQLTASYHYSNLQDVY------------------RQHFVGLLHSWPIG----PGELTSDLRFARSTDSGSAK-------------AGGIDNKSLNGMFTYSL--G-NHAFGAAWQRMNGDD-----AFP--YLEGSN-PYLVN-F--VQ---VNDFAGPKERSWQLRYDYDFVGLGIPGLTFMTRYVKGDNVELAG------------Q-GEGREWERNTELQYVFQSGAL----------KNLGIRWRNATFRSNF----TRDIDENRLIVSY---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y0L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 39317 for 2448 contacts (16.1/contact) +
2D Compatibility (PS) -33489 + (NN) -1043 + (LL) 5656
1D Compatibility (HY) 800 + (ID) 1950
Total energy: 9291.0 ( 3.80 by residue)
QMean score : 0.073
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