Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGLIAEDLGVAVDQVNVKATTTERLGFTGREEGIAVHAVALLMAR
3T80 Chain:C ((4-158))
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPD------GADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLM--
General information:
TITO was launched using:
RESULT:
Template:
3T80.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122850 for 1274 contacts (-96.4/contact) +
2D Compatibility (PS) -16490 + (NN) -10888 + (LL) 376
1D Compatibility (HY) -16800 + (ID) 5350
Total energy: -172002.0 ( -135.01 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_3T80.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T80-query.scw
PDB file :
Tito_Scwrl_3T80.pdb
: