Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKTRKDVCVPRHVAIIMDGNNRWAKKRLLPGVAGHKAGVDAVRAVIEVCAEAGVEVLTLFAFSSENWQRPADEVSALMELFLVALRREVRKLDENGIRLRIIGDRTRFHPELQAAMREAEAATAGNTRFLLQVAANYGGQWDIVQAAQRLAREVQGGHLAADDISAELLQGCLVTGDQPLPDLCIRTGGEHRISNFLLWQLAYAELYFSDLFWPDFKHAAMRAALADFSKRQRRFGKTSEQVEAEARPSC
3WYJ Chain:A ((19-240))
-----------RHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSS-----PAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE------------------
General information:
TITO was launched using:
RESULT:
Template:
3WYJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143984 for 1627 contacts (-88.5/contact) +
2D Compatibility (PS) -24669 + (NN) -21099 + (LL) 2364
1D Compatibility (HY) -22000 + (ID) 6150
Total energy: -215538.0 ( -132.48 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_3WYJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WYJ-query.scw
PDB file :
Tito_Scwrl_3WYJ.pdb
: