Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSNRYPLPAQTGLVVAPGLPPKNSTLRPDQLNKRLSSAWHHLYDLCPELLKIDPPDGLTILRGFLQWAAEQKAAWNWAMHLRLYCWLLQSPFGAKVTDEHLEVLMDASAARWTVDDTSANRGILLASQGGAHITQDWKAPQAGAGTRVPLERLDLPAPNWTFAYCAVPDPRLREFPGWKPLPARGSLVG-
1HZM Chain:A ((1-154))
MIDTLRPVPFASEMAISKTVAWLNEQLELGN----------------ERLLLMD-------CRPQELYESSHIES---AINVAIPGIMLRRLQKGNLPVRAL---FTRGEDRDRFTRRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRA--------FYLEGGFSKFQAEFSLHCETNLDGS
General information:
TITO was launched using:
RESULT:
Template:
1HZM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22064 for 1311 contacts (-16.8/contact) +
2D Compatibility (PS) -15916 + (NN) -7440 + (LL) 2212
1D Compatibility (HY) -7600 + (ID) 1000
Total energy: -51808.0 ( -39.52 by residue)
QMean score : 0.068
(partial model without unconserved sides chains):
PDB file :
Tito_1HZM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HZM-query.scw
PDB file :
Tito_Scwrl_1HZM.pdb
: