Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPRKVFSSQAYRHKVVLVSGGCSGIGRALALRFARAGARLAILDLDQAALDSLVQHLRDHLGGEALGLRCDVADADAVERAVALAVERFGGIDVLVNNAGITHRGT-FAETGLGVFRKVMAVNFFGAVHCTRAALPSLLER-RGQIVVLGSLTGFAPLLYRSAYNASKHALHGLFDTLRMELEGTGVSVTLACPGFTATDL----RKNALVGDGSVTRQPVQVLGSQVASPVEVAEAIFQGAARRRRLLVLSNVNWRARLLARFFPRLFEKLLVPRLSGLKPQP |
| 4FN4 Chain:C ((1-229)) | ------SYQSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELR-GMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTK--LMSLSSRLAEPEDIANVI---------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4FN4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -163898 for 1933 contacts (-84.8/contact) +
2D Compatibility (PS) -24138 + (NN) -9306 + (LL) 4308
1D Compatibility (HY) -16400 + (ID) 3850
Total energy: -213284.0 ( -110.34 by residue)
QMean score : 0.573
|
|
|