Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALTNEDIINAVSEMSVMQVVELIKAMEEKFGVTAAAATVAAAG-----PAAAAAEEQTEFTIVLAEAGDKKVNVIKVVRELTGLGLKEAKAVVDGAP---GVVKEGASKEEAEAAKKALEEAGAKVELK
1DD3 Chain:A ((2-128))
---TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQEEKTEFDVVLKSFGQNKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVELK
General information:
TITO was launched using:
RESULT:
Template:
1DD3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38720 for 790 contacts (-49.0/contact) +
2D Compatibility (PS) -13513 + (NN) -8162 + (LL) 528
1D Compatibility (HY) -10800 + (ID) 3500
Total energy: -74167.0 ( -93.88 by residue)
QMean score : 0.697
(partial model without unconserved sides chains):
PDB file :
Tito_1DD3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DD3-query.scw
PDB file :
Tito_Scwrl_1DD3.pdb
: