Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRMP------LATASLLALAISLAGCGDDKKAEAPATPAASTQPAAPAAAPAAKVDEAAAKAVIKNYADLAEATFADALSTAKDLQKAIDAFLAKPDAETLKAAKEAWFAARTPYSQSEAFRFGNAIIDDWEGQVNAWPLDEGLIDYVAKDYQHAL-GNPGATANIVANTEIQVGEDKIDVKEITGEKLASLNELGGSEANVATGYHAIEFLLWGQDLNGTGPGAGNRPATDYAQGKDCTGGHCDRRAAYLKAVTDLLVSDLEYMAGQWKAGVADNYRAKLEAEPVDTGLRKMFFGMGSLSLGELAGERMKVALEANSTEDEHDCFSDDTHHTLFFNGKSIRNIYLGEYKRIDGSVVKGPSLADLVAKADAAANDTLKADLADTEAKLQAI----VDSAEKDGVHFDQMIAPDNKDGQQKIRDAIAALVKQTGAIEQAAGKLGIQDLKPDNADHEF |
| 4WBX Chain:C ((12-390)) | RFPFPVGEPDFIQGDEAIARAAILAGCR--FYAGYPITPASEIFEAMALYMPLVD-------GVVIQMED-EIASIAAAIGASWAGAKAMTAT-SGPGFSLMQENIGYAVMTETP-----------VVIVDVQRS--------GLPA--QGDIMQAIWGTHGDHSLIVLSPS----------------TVQEAFDFTIRAFNLSEKYR----------------------------------------------TPVILLTD-----------------------------------------AEVGHMRERVYI---PNPDEIEIINRLIKRIVEKIEKNKKDIFTYETYELEDAVATG-----IVARSA-------------LLLKIETIWPFDFELIERIAERVDKLYVPEMNLGQ--LYHLIKEGANGKAEVKLIS-KIGGEVHTPMEIFEFI |
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General information:
TITO was launched using:
| RESULT:
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Template: 4WBX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 15146 for 2530 contacts (6.0/contact) +
2D Compatibility (PS) -29967 + (NN) -5544 + (LL) 8592
1D Compatibility (HY) -11600 + (ID) 3000
Total energy: -26373.0 ( -10.42 by residue)
QMean score : 0.260
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