Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVLIVHAHNEPQSFTRALCDQACETLAGQGHAVQVSDLYAMNWNPVASAADFAER-ADPDYLVYALEQRESVKRQSLAADIQAELDKLLWADLLILNFPIYWFSVPAILKGWFDRVLVSGVCYGGKRFYDQGGLAGKKALVSLTLGGRQHMFGEGAIHGPLEDMLRPILRGTLAYVGMQVLEPFVAWHVPYISEEARGNFLRAYRARLENLEQDVPLRFPRLEQFDALLQPLAR
4QOD Chain:B ((5-221))
-KVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPI-----------------
General information:
TITO was launched using:
RESULT:
Template:
4QOD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172015 for 1681 contacts (-102.3/contact) +
2D Compatibility (PS) -22861 + (NN) -6600 + (LL) 1752
1D Compatibility (HY) -22000 + (ID) 4700
Total energy: -226424.0 ( -134.70 by residue)
QMean score : 0.443
(partial model without unconserved sides chains):
PDB file :
Tito_4QOD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QOD-query.scw
PDB file :
Tito_Scwrl_4QOD.pdb
: