Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DTSPSQCKEERNL-LVNACRPVIYGR--S----------P-----------SADCCQRVRVSHVECVCPYVTPKTASIIGA---------IGVDNVVKKIEGCGRTVPRKFKCGSITTP
1PSY Chain:A ((16-116))
----QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21513 for 482 contacts (-44.6/contact) +
2D Compatibility (PS) -6682 + (NN) 560 + (LL) 296
1D Compatibility (HY) -800 + (ID) 700
Total energy: -28839.0 ( -59.83 by residue)
QMean score : 0.179
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: