Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MLAETWALLILT-LLEIILS---------IDNLIFISLAIDRVPNALRERVRIVGFALALQMRFVTLFFTSYILSMQKPIFYAASFNISVKDLLMIAGGLFLIIKSFIE-LWNDIFSRKQVEKKIDIKSQLL--LAVLQIILIDLVFSVDSLLTAIALTHS-MVIIAIACVFSILAMIFLSSYTAQLIKSSSSLKIIAILFIVLV-GVHLMLD-GLHVELPKEYLYSSLTFALFVEVTSSIKKKVRCIKKKKQF-----------
4PX7 Chain:A ((1-258))
GRSIARRTAVGAALLLVMPVAVWISGWRWQPGSWLLKAAFWVTETVTQPWGVITHLILFGWFLWC-LRFRIKAAFVLFAILAAAILVGQGVKSWIKDKVQEPRPFVIWLEKTHHMPVDKFYTLKRAERGNLVKEQLAEPQYLRSHWQKETGFAFPS-------GHTMF-----AASWALLAVGLLWP------RRRTLTIAILLVWATGVMGSRLLLGMHWPRDLVVATLISWALVAVATWLAQRICGPLTPPEENREIAQREQESLEHH
General information:
TITO was launched using:
RESULT:
Template:
4PX7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -187024 for 1572 contacts (-119.0/contact) +
2D Compatibility (PS) -22880 + (NN) -8765 + (LL) 2928
1D Compatibility (HY) -7600 + (ID) 1750
Total energy: -225091.0 ( -143.19 by residue)
QMean score : 0.277
(partial model without unconserved sides chains):
PDB file :
Tito_4PX7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PX7-query.scw
PDB file :
Tito_Scwrl_4PX7.pdb
: