Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEIIVYTQNDCPPCTFVKNYLNEHQIDFEERNIN-NQQYRNEMID-FDAFSTPFILLNGNPMYHVDLDEINKVLNIQD
2KHP Chain:A ((6-70))
-VDVIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHVGGC-------------
General information:
TITO was launched using:
RESULT:
Template:
2KHP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41691 for 395 contacts (-105.5/contact) +
2D Compatibility (PS) -6719 + (NN) -1255 + (LL) 1060
1D Compatibility (HY) -2800 + (ID) 750
Total energy: -52155.0 ( -132.04 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_2KHP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KHP-query.scw
PDB file :
Tito_Scwrl_2KHP.pdb
: