Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKGQHFIVTGGTSGLGLSIVRKLLENKVHVTLLVRDVDKATRIFEQELG--KTINVIPCDLNDLKSIQALQF---EDNTSFDGFIYSAGLGYFKSISDHSFSEMIETYQLNLISFNVLYTVLRPYLTS--NAHIVGISSQAAFSTQANAAHYGASKAGFYALMNALRLES-P-NLHIMTVNVGPIDTPFHQKA-DPSM---KYAKKMGEIMLDANQLAEDIIYGIKTKQLEINRPKWMHHALKMYQIAPRFFERCFPKLFKNKA
3GAF Chain:A ((10-244))
-NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPF-DMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVLTPEIERAMLKHTPLGRLGEAQDIANAALFLCSP-AAAWISGQVL--------------------------
General information:
TITO was launched using:
RESULT:
Template:
3GAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153498 for 1840 contacts (-83.4/contact) +
2D Compatibility (PS) -23947 + (NN) -9812 + (LL) 2524
1D Compatibility (HY) -5200 + (ID) 2200
Total energy: -192133.0 ( -104.42 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_3GAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GAF-query.scw
PDB file :
Tito_Scwrl_3GAF.pdb
: