Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGRQA----FEFGLRPKDQFKVMQHFDLNTNHLEVLNRLYTPLIGTQAVGLYHFMTQFVKDSHNETL---------------ILSHYIFMNEL-------KINLLEFRQ-QMDLLEAIGLLKAFVKHDEQ-ETQFVYQLIQPPSAHLFFNDPMLSIFLY-SEVEHRRFHELKKYFEYQQIDLSEFKQVTRQFTDVFKVPSTKIDIDTSDIPINEPYQGIDLSNESFDFEMLRQMLG--KHFISQDIVTKDAK----RLI-TQLATLYGLTADGMKHVILNSITSGQQLSFEEMRKQARSYYLMEHENQMPKLQVKSPATSSSTGKSSEVNPKPQSDEWFELLEQTSPIDMLASWSESEPTI----SQKTMVEELIEREKMSFGVIN--------ILLQFVMLKEDMKLPKAYILEIASNWKKKGIKTAKEAYNYAKKVNQPKNEGSSGNYQKRGSYYGQRNRISKEKTPKWLENRDKPSEEDSAKDNSVDDQQLEQDRQAFLDKLSKKWEEDSR |
| 2BMF Chain:A ((169-618)) | MASIEDNPEIEDDIFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVT-------DFKGKTVWF-----VPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRV--------------------------GR----NPKNENDQYIYMGEPLENDEDCAHWKEAKMLLDNINTPEGIIPSMFEPEREKVDAIDGEYRLRGEARKTFVDLMRRGDLPVWLAYRVAA--EGINYADRRWCFDGVKNNQILEENVEVEIWTKEGE--------RKKLKPRWLDARIYS-----------DPLALKEFKEFAAGRK--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2BMF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 17799 for 3082 contacts (5.8/contact) +
2D Compatibility (PS) -40672 + (NN) -3139 + (LL) 4108
1D Compatibility (HY) -8000 + (ID) 4000
Total energy: -33904.0 ( -11.00 by residue)
QMean score : 0.149
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