Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKQLNSVEAFREFIHQYPLAVVHVMRDQCSVCHAVLPQIEDLMQSYP-NVPLAVINQSQVEAIAGELNIFTVPVDLIFMNGKEMHRQGRFIDMQRFEHHLKQMNDSVNNDVDEHEYRK
3TCO Chain:A ((7-108))
---LVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNKYL--------------
General information:
TITO was launched using:
RESULT:
Template:
3TCO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90378 for 741 contacts (-122.0/contact) +
2D Compatibility (PS) -10720 + (NN) -4141 + (LL) 940
1D Compatibility (HY) -8000 + (ID) 1100
Total energy: -113399.0 ( -153.04 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_3TCO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TCO-query.scw
PDB file :
Tito_Scwrl_3TCO.pdb
: