Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYDYDEPLYLISVVAKILGVHPQTSRQYEKEGLIEPS-RTDGKMRLYSQRDMDKIKTILRLTRDMGVNLAGVDIILRLKEKLDELDNLNKELQDALHKHSKNTKTPTKNLNTPTNFYELILFKK
2VZ4 Chain:A ((1-97))
-------SYSVGQVAGFAGVTVRTLHHYDDIGLLVPSERSHAGHRRYSDADLDRLQQILFYRE-LGFPLDEVAALLDD---RAHLRRQHELLSARIGKLQKMAAAVEQAME-------------
General information:
TITO was launched using:
RESULT:
Template:
2VZ4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36619 for 563 contacts (-65.0/contact) +
2D Compatibility (PS) -9705 + (NN) -4785 + (LL) 484
1D Compatibility (HY) -5200 + (ID) 1350
Total energy: -57175.0 ( -101.55 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_2VZ4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VZ4-query.scw
PDB file :
Tito_Scwrl_2VZ4.pdb
: