Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADTINTTETTHETKKPNAFVNFFKNNLTDKRYDSLGLIGAGVLCCVLSGAMGIVGIIFVAIGIFLSFSNINLVKLVEKLSKKQPKAATTVNNETQKSQAASVTNEPTEAKETKD
1Y04 Chain:A ((1-35))
-------------------------------------------------------------------------------GSMNAPARAAAKTAADALAAAKKTAADAAAAAAAA-
General information:
TITO was launched using:
RESULT:
Template:
1Y04.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 12391 for 143 contacts (86.7/contact) +
2D Compatibility (PS) -3606 + (NN) 1354 + (LL) 5400
1D Compatibility (HY) 1200 + (ID) 250
Total energy: 16489.0 ( 115.31 by residue)
QMean score : 0.497
(partial model without unconserved sides chains):
PDB file :
Tito_1Y04.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y04-query.scw
PDB file :
Tito_Scwrl_1Y04.pdb
: