Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----MIGVYIISLKESQRRLDTEKLVLESNEKFKGRCVFQIFDAISPKHQDFEKLLQE-LYNAQSLLQSDWYHSYVGAGLTLPELGCYLSHYLLWK------ECVKLDQPVVILEDD-----VTLESHFM--QALEDCLKSPFDFVRLYGCYWYYHETKFHVLPK---------EFVFPPFDHSFKNNPI----LEKFKKFFDVSRFLN-LSTHKVIHYILKKIQKSYYATH---------------------EKEAFFLEHFYLTSVYVASTAGYYLTPKGAKTFIE----------ATESFKIIEPVDMFMDNSAYHDVANLTYVPCPVSLSEHSLD------------STIQKPQKKSLKSYPLPPQKSTFKNLFYY-----SLNAKKRLNAFQQYS--------KQYAPLKTPKEV------------- |
| 3J9O Chain:B ((79-505)) | VIDKLIDLQVNSIISNDEFRALEQEWLKVQEVCQEDYDNVEVSILDVKKEELQYDFERNLYDISS---SDFFKKVYVSEFDQYGGEPYGAILGLYNFENTTNDIIWLTGMGMVAKNSHAPFIASIDKSFFGVKDLSEITHIK-SFEALLEHPRYKEWNDFRNLDVAAYIGLTVGDFMLRQ-PYNPENNPVQYKLMEGFNEFVDYDKNESYLWGPASIH-LVKNMMRSYDKTRWFQYIRGVESGGYVKNLVACVYDNKGILETKSPLNVLFADYMELSLANIGLIPFVSEKGTSNACFFSVNSAKKVEEFVDGFDSANSRLIANLSYTMCISRISHYIKCVIRDKIGSIVDVESIQKILSDWISEFVTTVYQPTPLEMARYPFRNVSIEVKTIPGKPGWYSCKINVIPHIQFEGMNTTMTIDTRLEPELFGTNN |
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General information:
TITO was launched using:
| RESULT:
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Template: 3J9O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -41561 for 1971 contacts (-21.1/contact) +
2D Compatibility (PS) -32422 + (NN) 8127 + (LL) 828
1D Compatibility (HY) -14000 + (ID) 3200
Total energy: -82228.0 ( -41.72 by residue)
QMean score : 0.093
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