Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDFLEIVG-QVPLKGEVEISGAKNSALPILAATLLSHQEVKIKSLPQVVDIKAMALLLQNLGAELEWLNPHTLQLSAKSLHHTEATYDLVRKMRASILVLGPLLARFKECLVSLPGGCAIGARPVDLHLKAMQQLGAEIKIEQGYIHAKAPKGLKGNDILFDKISVTGTENALMAASLAKGITRIINAAKEPEIAQLCAFLQSGGVEIEGVDSSELKIRGVESDALNLKDIQIIPDRIEAGTCLCVGAITNSQLKINHIIPNHIQAITDKLIEIGFPLDIQENSIEI-YPAKKRQAFEITTKEYPGFPTDMQAQFMALATQCLGTSIIEETLFENRFMHASELQRLGANISLKTNVATISGSTELTGSDVMATDLRASSALVLAALVAKGVSRVHRIYHLDRGYERLEDKVNALGAKVLRLKEK |
3VCY Chain:C ((1-417)) | MDKFRIQGSDKPLSGEVTISGAKNAALPILFASLLAEEPVEVANVPKLRDVDTTMELLKRLGAEVS--RNGSVHIDASGVNDFCAPYDLVKTMRASIWALGPLVARFGKGQVSLPGGCAIGARPVDLHIHGLEQLGATIKLEEGYVKAEVDGRLKGAHIVMDKVSVGATITVMCAATLAEGTTVLENAAREPEIVDTANFLNAIGAKVSGMGTDTITIEGVER--LGGGYHEVVADRIETGTFLVAAAVSGGKIVCKNTKAHLLEAVLAKLEEAGADVQTGDDWISLDMTGRELKAVNIRTAPHPAFPTDMQAQFTLLNMMAKGSGIITETIFENRFMHIPELQRMGAHAEIEGNTAICGDTDGLSGAQVMATDLRASASLVIAGCIAKGETIVDRIYHIDRGYDKIEDKLTALGANIERVHS- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3VCY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -307054 for 3917 contacts (-78.4/contact) +
2D Compatibility (PS) -44152 + (NN) -6678 + (LL) 464
1D Compatibility (HY) -34000 + (ID) 9500
Total energy: -400920.0 ( -102.35 by residue)
QMean score : 0.511
|
|
|