Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKSERLNDMMLFLND-KNVFQLSDIMTKYDISRSTAIRDVKSLEEIGMPIYSERGRNGHYQVLRNRLLSPIVFNIDEVFALYFSMLTLKAYETTPFHLSVEKLKTKFERCLSAEKIEMLRK-TEEVFSLGYIKHNNQCEFLDVILQFTMEEKVCQINYDKKGIEKTYVVQFYNISSAYGQWYVTSYNFETKRMQVFRCDRILELEENHAFEAKKLTDLKSETDYLYKKKDAINFEVEIASNGVDLFFKENYPSMKLNQEQGRNVIRGFYNRGEEPFIINYLLGFGDKINMVQPDSLKEMLLNELKSLQNHLQKLS |
1MKM Chain:A ((4-249)) | MNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKG---FVLRKKDKRYVPG-----------------------------YKLIEYGSFVLRRFNIRDIAHDHLVDIMKRTGETVHLILKDGF----------EGVYIDKVEGEQSIPMVSRLGMKVDLY--STASGKSILAF------------------VPEKELKEYLKIVELKPKTPNTITNPRVLKRELEKIRKRGYAVDNEENE------IGIMCVGVPIFDHNGYPVAGVSISGVARKFTEEKIEEYSDVLKEKAEEISRKLGY-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MKM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -47516 for 1907 contacts (-24.9/contact) +
2D Compatibility (PS) -25761 + (NN) -9532 + (LL) 6628
1D Compatibility (HY) -4800 + (ID) 2100
Total energy: -83081.0 ( -43.57 by residue)
QMean score : 0.366
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