Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQIEKLRGQGLDEFFQGILTLENLEECYAFFDDVCTVNEIQSMAQRFQVAKMLHDGKTYNVIESETGASTATISRVKRSLHYGNDMYDVVFSRMTKPE
1GDT Chain:A ((150-181))
-----------------------------------------------AVLNMWQQGLGASHISKTMNIARSTVYKVINE-------------------
General information:
TITO was launched using:
RESULT:
Template:
1GDT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3864 for 194 contacts (-19.9/contact) +
2D Compatibility (PS) -3463 + (NN) -858 + (LL) 5188
1D Compatibility (HY) -1600 + (ID) 300
Total energy: -4897.0 ( -25.24 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_1GDT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GDT-query.scw
PDB file :
Tito_Scwrl_1GDT.pdb
: