Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKKIIAVDLDGTLLHNNNTISDYTADTLRKVQAQGHKVIITTGRPYRMALAHY-LRLDLKTPMINFNGALTHIPEKKWAFERSATIDKKLLLETLNLSDAIQADFIASEYRKNFYITMDNRDKINPQLFGVNEITDKMALDVTKI-TRNPNALLMQTRHK-DKYELAKELRQHFNHELEVDSWGGPLNILEFSPKGVNKAYALKHLLKSLNLSQENLIAFGDEHNDTEMLAFAHTGYAMKNANPTLLPYADQ--QIQWTNEEDGVAKTLEKLLL |
| 3PGV Chain:A ((21-283)) | --YQVVASDLDGTLLSPDHFLTPYAKETLKLLTARGINFVFATGRHYIDV-GQIRDNLGIRSYMITSNGARVHDS-DGQQIF-AHNLDRDIAADLFEIVRNDPKIVTNVYREDEWYMNRHR-------FFKEAVF-NYKLYEPGELDPQGISKVFFTCEDHEHLLPLEQAMNARWGDRVNV-SFS-TLTCLEVMAGGVSKGHALEAVAKMLGYTLSDCIAFGDGMNDAEMLSMAGKGCIMANAHQRLKDLHPELEV-IGSNADDAVPRYLRKLYL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PGV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -70631 for 2128 contacts (-33.2/contact) +
2D Compatibility (PS) -27417 + (NN) -11346 + (LL) 840
1D Compatibility (HY) -18000 + (ID) 3100
Total energy: -129654.0 ( -60.93 by residue)
QMean score : 0.452
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