Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKLGCLGVLMSIPFFIVVIVTIIFSSSQGDCQVTPDLSTQFVTSSDSASQTDWTKKGSIANVTAGKVFHAWVSKGL---SGASAAGIVGWVNSEGGFGKYSWNYRYVTTAELKNEGYTFYNPAKLGYQIMKSVGTVGK
2NWD Chain:X ((8-45))
--------------------------------------------------------------------LARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHL
General information:
TITO was launched using:
RESULT:
Template:
2NWD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15615 for 160 contacts (-97.6/contact) +
2D Compatibility (PS) -3672 + (NN) -400 + (LL) 4340
1D Compatibility (HY) -1200 + (ID) 400
Total energy: -16947.0 ( -105.92 by residue)
QMean score : -0.058
(partial model without unconserved sides chains):
PDB file :
Tito_2NWD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NWD-query.scw
PDB file :
Tito_Scwrl_2NWD.pdb
: