Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDAKFDFAKLLVYKAGQFIKSEMQNTFDVEEKSRFDDLVTSLDKKTQKLLIQEIIQHYPDDNILAEEDDVRSP--IAQGNVWVLDPIDGTVNFIVQKDNFAVMLAYYEEGVGQFGIIYDVM-ADILYSGGGHFDVYANDKKIVPFQECPLERCLLGVNSAMYAE--N----DCGIAHLAS-ETLGVRIYGGAGISMAKVMQGKLLAYFSY-IQPWDYAAAKIMGETLGFTLLTLDGEEPNYSTRQKVMFL-PKSKLNLIQSYLTKK
2FVZ Chain:A ((17-277))
-EECFQAAVQLALRAGQIIRKALTEE-------------TETDHLVEDLIISELRERFPSHRFIAEEA----KCVLTHSPTWIIDPIDGTCNFVHRFPTVAVSIGFAVRQELEFGVIYHCTEERL-YTGRRGRGAFCNGQRLRVSGETDLSKALVLTEIGPKRDPATLKLFLSNMERLLHAKAHGVRVIGSSTLALCHLASGAADAYYQFGLHCWDLAAATVIIREAGGIVIDTSGGPLDLMA-CRVVAASTREMAMLIAQAL---
General information:
TITO was launched using:
RESULT:
Template:
2FVZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -190635 for 1984 contacts (-96.1/contact) +
2D Compatibility (PS) -25140 + (NN) -13249 + (LL) 1792
1D Compatibility (HY) -11600 + (ID) 2800
Total energy: -241632.0 ( -121.79 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_2FVZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FVZ-query.scw
PDB file :
Tito_Scwrl_2FVZ.pdb
: