Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTLFLIMMERAGLIILLAYAFVHIPFIKQTLKQPELKKHQYILLILFSLFAIISNFTGVEIQSDLSIIPQTLNHIADQSSVANTRVLTIGVSGLIGGPIVGIIVGLLSVFVRYLQGGLAPHIYVISSLLIGLCSGLSGNYLRKNYNKIRVLDAMVVGFGMEILQMICILIFSVDFNQALRLVSFISMPMILSNTLGLGIFISIISSTQKLEEHAKAFQTHQVLELANLTLPYLRKGLTTESCQPVAEIIHKHMDVSAVSLTSQSAILAYVGDGADHHLPNTQILTKLAKRAIDTGKVSVATDKSEIECDHKNCPLSSAIVIPLHIHDVIVGTLKLYFSDAQHMTYVDRQLAEGLGNIFSTQLALGQAEEATRLLQDAEMKSLQAQVNPHFLFNALNTIYGLIRM------DSEKARKLVQDFSKVIRANLQRA--KQNLIPLHDELEQVNAYLALEEARFPNMVAFNLDNQTNSDDNLMIPP----FTLQVLIENSYKHAFKHVNKNNQLKVTIARNNDRLHIIVQDNGIGIPKEKLITLGKKTQISKQGSGTAIENLVRRLNIIYDGQASLKFESN-DSGTCAIVNIPIKN |
| 3JZ3 Chain:A ((40-214)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALLQLHGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDLLQSSVMDIYHTAQQ--AKIDVRLTLNA-HSIKRTGQPLLLSLLVRNLLDNAVRYS----PQGSVVDVTLNAD----NFIVRDNGP----------------------LGLSIVQRIAKLHGM---NVEFGNAEQGGFEAKVSWLEH- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3JZ3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -35015 for 958 contacts (-36.6/contact) +
2D Compatibility (PS) -14513 + (NN) -8405 + (LL) 34952
1D Compatibility (HY) -4400 + (ID) 1250
Total energy: -28631.0 ( -29.89 by residue)
QMean score : 0.433
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