Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNKGLIATLILLTILVVGELFYNKSEKHLNLSEKQVVKIGILQY-VPHDALDAIEKGVEDGLAQEGYKGKKVKLTVLNAEADQSKIQAMSKQLVNHHNDILIGIATPSAQGLAASTKDTPIIMGAVSDPLGAKLVTNMKKPTTNVTGLSNVVPTKQTVQLIKDITPNVKRIGILYASSEDNSVSQVTEFTKYAQKAGLEVLKYSV---PSTNEIKTSMSVM---TKKVDAVFVPQDNTIASAFRTVIVAANQ--ANIPVYSSVDTMVE--Q-GSIASVAQSQYGLGLETAKQAIKVLRGKPVKDVPVKVIDTGKPSLNLKAAKHLGIKIPKKIMKQAEITVKVDD |
| 3GYB Chain:A ((4-272)) | -----------------------------------RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYR-----LSVIDSLTSQ-AGTDPITSALSMRPDGIIIAQDI----------LPPFVIAGTRITQA---------STHDSVANDDFRGAEIATKHLIDL--GHTHIAHLRVGS-GAGLRRFESFEATMRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSNDITAIGALGAARELGLRVPEDLSIIGYDNTPLAQTRLINLTTIDDNSIGVGYNAALLLLSMLDPEAPHPEI--MHTLQPSLIERGTCAPR-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GYB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -60941 for 2171 contacts (-28.1/contact) +
2D Compatibility (PS) -25862 + (NN) -5722 + (LL) 6760
1D Compatibility (HY) -4800 + (ID) 1700
Total energy: -92265.0 ( -42.50 by residue)
QMean score : 0.386
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