Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDVLIIEDDPMVEFIHRNYLEKLNYFQNIYSTASQTQAIAYLNDIKIQLVLLDIHIKEGNGLELLKLLRNQHQNTEVIVISAANEAHTVKEAFHLGIVDYLIKPFTFERFESSIEKFLNHYHTFEADKIYQDNIDHFQKIDSGWLEGEVKLDEKGLSEITYQHILDAIQELEQPFTIQELAKCSQFSHVSVRKYIAYMEEKGLLTSQQIYTKVGRPYKVYKLIKKT
1YIO Chain:A ((6-190))
-TVFVVDDDMSVREGLRNLLRSA-GFEV-ETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERR-Q-ARE-----TQDQ--------LEQLFSSLTGRE-QQVLQLTI---RGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVRSLANLVHLVEKY---------
General information:
TITO was launched using:
RESULT:
Template:
1YIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105723 for 1329 contacts (-79.6/contact) +
2D Compatibility (PS) -20042 + (NN) -7866 + (LL) 1636
1D Compatibility (HY) -3200 + (ID) 1700
Total energy: -136895.0 ( -103.01 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_1YIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YIO-query.scw
PDB file :
Tito_Scwrl_1YIO.pdb
: