Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMGRKWNNIKEKKASKDANTSRIYAKFGREIYVAAKQGEPDPESNQALKVVLERAKTYSVPKNIIERAIEKAKGGAEENYDELRYEGFGPNGSMIIVDALTNNVNRTAPEVRAAFGKNGGNMGVSGSVAYMFDATAVIGVEGKTADE-ALEILMEADVDVRDILEE-DDSAIVYAEPDQFHAVQEAFKNAGVEEFTVAELTMLAQSEVTLPDDAKEQFEKLIDALEDLEDVQQVYHNVDLGE
4F3Q Chain:A ((9-244))---KWANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAANMPKDTITRAIKRGA----DNLVEVRYEGYGPSGVAVMVDCLTDNKNRTVAEVRHAFSKCDGNLGTEGSVAYLFKQRGLITFPPNSDEEKIMEIALEVGAE--DVTTNDDGSIDVTTLPEDFEKIRNAMKAADLNP-SHAEVTVLASTEVGLDKDSAEQMLRLTEMLEDLDDVQNVYSNADYPE


General information:
TITO was launched using:
RESULT:

Template: 4F3Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 965 -81897 -84.87 -357.63
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain A : 0.84

3D Compatibility (PKB) : -84.87
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.84
QMean score : 0.612

(partial model without unconserved sides chains):
PDB file : Tito_4F3Q.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4F3Q-query.scw
PDB file : Tito_Scwrl_4F3Q.pdb: